Diff between FAT32 and NTFS re daylight savings time

This drives me nuts: If you have two partitions--one w NTFS, one with
FAT32, they'll go out of time-sync by one hour when daylight savings
time changes. MS chose to handle it differently on the two file
systems.

Some archiving software (Araxis Merge) has an option to regard the
files as same data/time if it's off by one hour. But I'm sure that's
not the best way to do it.

Not sure if there are any better groups to ask this (let me know),
but is there any way to correct this?

_R